PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74977.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 288aa    MW: 31537.3 Da    PI: 7.0189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74977.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-07119163554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  Y+++L
  MLOC_74977.2 119 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAVYLHEL 163
                   889**********************7.....6999999******999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-11114184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.414114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-7118164No hitNo description
Gene3DG3DSA:4.10.280.101.1E-8119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-5120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQMDSYYFHD DAHFFAGCGV PGSPFADLIA SLSTEPLPAA AASQSAFREY RGVGLELPGA  60
ARGGMAGVGS KGNIHRRMMG VLARMGPSAG GSYCEEDGQE ERPQQQAAGA VESSRGFRHM  120
MRERQRREKL SQSYADLYAM VSSRSKGDKN SIVQSAAVYL HELKVAKDQL QRRNDELKAK  180
ILGHDAQQQC VKVQFEVDEP SSSIDSMIGA LRRLKSMNVK TRGIHSTLSG QRLTTEMNVE  240
TTIAAGEVEK AVEEALQEVE RNQLHDSEAS FPGSRSGWPQ TSHVQNVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659030.0AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752663.11e-124PREDICTED: transcription factor bHLH78
SwissprotQ75KV91e-112BH148_ORYSJ; Transcription factor BHLH148
TrEMBLF2DPT50.0F2DPT5_HORVD; Predicted protein
STRINGMLOC_74977.51e-179(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.14e-29bHLH family protein